STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1845Hypothetical protein; Identified by Glimmer2; putative. (116 aa)    
Predicted Functional Partners:
SdhA
Succinate dehydrogenase, flavoprotein subunit; Identified by match to protein family HMM; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.959
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
 
     0.835
CC_1846
Methyltransferase, putative; Identified by match to protein family HMM.
       0.773
CC_2196
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.634
CC_3319
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0335 family.
  
    0.610
CC_1847
ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family.
     
 0.554
CC_3741
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.552
CC_1887
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.518
CC_2345
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0262 family.
  
     0.488
CC_1365
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.424
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.