Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CC_1327 | CC_1846 | CC_1327 | CC_1846 | Ubiquinone/menaquinone biosynthesis methlytransferase family protein; Identified by match to PFAM protein family HMM PF01209. | Methyltransferase, putative; Identified by match to protein family HMM. | 0.447 |
| CC_1327 | bioB | CC_1327 | CC_3521 | Ubiquinone/menaquinone biosynthesis methlytransferase family protein; Identified by match to PFAM protein family HMM PF01209. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.426 |
| CC_1845 | CC_1846 | CC_1845 | CC_1846 | Hypothetical protein; Identified by Glimmer2; putative. | Methyltransferase, putative; Identified by match to protein family HMM. | 0.773 |
| CC_1845 | CC_1847 | CC_1845 | CC_1847 | Hypothetical protein; Identified by Glimmer2; putative. | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. | 0.554 |
| CC_1845 | mfd | CC_1845 | CC_1844 | Hypothetical protein; Identified by Glimmer2; putative. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.835 |
| CC_1846 | CC_1327 | CC_1846 | CC_1327 | Methyltransferase, putative; Identified by match to protein family HMM. | Ubiquinone/menaquinone biosynthesis methlytransferase family protein; Identified by match to PFAM protein family HMM PF01209. | 0.447 |
| CC_1846 | CC_1845 | CC_1846 | CC_1845 | Methyltransferase, putative; Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.773 |
| CC_1846 | CC_1847 | CC_1846 | CC_1847 | Methyltransferase, putative; Identified by match to protein family HMM. | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. | 0.536 |
| CC_1846 | bioB | CC_1846 | CC_3521 | Methyltransferase, putative; Identified by match to protein family HMM. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.426 |
| CC_1846 | mfd | CC_1846 | CC_1844 | Methyltransferase, putative; Identified by match to protein family HMM. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.773 |
| CC_1847 | CC_1845 | CC_1847 | CC_1845 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.554 |
| CC_1847 | CC_1846 | CC_1847 | CC_1846 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. | Methyltransferase, putative; Identified by match to protein family HMM. | 0.536 |
| CC_1847 | mfd | CC_1847 | CC_1844 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.588 |
| bioB | CC_1327 | CC_3521 | CC_1327 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Ubiquinone/menaquinone biosynthesis methlytransferase family protein; Identified by match to PFAM protein family HMM PF01209. | 0.426 |
| bioB | CC_1846 | CC_3521 | CC_1846 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Methyltransferase, putative; Identified by match to protein family HMM. | 0.426 |
| mfd | CC_1845 | CC_1844 | CC_1845 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | Hypothetical protein; Identified by Glimmer2; putative. | 0.835 |
| mfd | CC_1846 | CC_1844 | CC_1846 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | Methyltransferase, putative; Identified by match to protein family HMM. | 0.773 |
| mfd | CC_1847 | CC_1844 | CC_1847 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM; Belongs to the DEAD box helicase family. | 0.588 |