STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1853Hypothetical protein; Identified by Glimmer2; putative. (134 aa)    
Predicted Functional Partners:
CC_1854
Identified by match to PFAM protein family HMM PF01075.
 
     0.842
flbA
Flagellin modification protein FlmG; Identified by match to protein family HMM.
     0.644
CC_1856
Identified by match to PFAM protein family HMM PF01553.
     
 0.555
CC_1855
Transcriptional regulator, TetR family; Identified by match to protein family HMM.
       0.540
CC_1852
Hypothetical protein; Identified by Glimmer2; putative.
       0.522
CC_1924
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.491
nuoI
NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
   0.439
CC_1938
NADH dehydrogenase I, M subunit; Identified by match to PFAM protein family HMM PF00361.
    
   0.436
CC_2263
Sugar isomerase, KpsF/GutQ; Identified by match to protein family HMM; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.400
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.