STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1858Identified by match to protein family HMM; Belongs to the HesB/IscA family. (104 aa)    
Predicted Functional Partners:
CC_1865
Aminotransferase, class V; Identified by match to protein family HMM.
 
  
 0.972
CC_0462
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.960
CC_1864
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.938
fdxB
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM.
 
 
 0.884
CC_1862
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
  
 
 0.848
CC_1866
RrF2 family protein; Identified by match to PFAM protein family HMM PF02082.
 
  
 0.842
CC_1861
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.841
CC_1857
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CC_1860
Aminotransferase, class V; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
 0.746
CC_0062
NifU-like domain protein; Identified by match to protein family HMM.
 
 
 0.744
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.