STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1867Conserved hypothetical protein; Identified by Glimmer2; putative. (281 aa)    
Predicted Functional Partners:
CC_3741
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.653
CC_1864
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.641
CC_1862
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
  
  
 0.634
CC_1861
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.632
CC_3292
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.632
bamD
Competence lipoprotein ComL, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.631
CC_1865
Aminotransferase, class V; Identified by match to protein family HMM.
  
    0.617
CC_1859
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.613
CC_1866
RrF2 family protein; Identified by match to PFAM protein family HMM PF02082.
  
    0.613
CC_1860
Aminotransferase, class V; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.598
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.