CC_1890 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_1890

Identified by match to protein family HMM. (165 aa)

Predicted Functional Partners:

CC_0587

0.774

CC_1889

0.570

CC_1891

0.540

hfaB

0.519

CC_0737

0.495

CC_2944

0.470

CC_1244

0.458

CC_2938

0.425

CC_1888

0.420

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0587	CC_1890	CC_0587	CC_1890	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.774
CC_0737	CC_1244	CC_0737	CC_1244	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.537
CC_0737	CC_1890	CC_0737	CC_1890	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.495
CC_0737	hfaB	CC_0737	CC_2629	Identified by match to protein family HMM.	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	0.484
CC_1244	CC_0737	CC_1244	CC_0737	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.537
CC_1244	CC_1890	CC_1244	CC_1890	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.458
CC_1244	hfaB	CC_1244	CC_2629	Hypothetical protein; Identified by Glimmer2; putative.	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	0.710
CC_1888	CC_1889	CC_1888	CC_1889	Hypothetical protein; Identified by Glimmer2; putative.	Ribonucleotide reductase-related protein; Similar to GP:3402271; identified by sequence similarity; putative.	0.555
CC_1888	CC_1890	CC_1888	CC_1890	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.420
CC_1889	CC_1888	CC_1889	CC_1888	Ribonucleotide reductase-related protein; Similar to GP:3402271; identified by sequence similarity; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.555
CC_1889	CC_1890	CC_1889	CC_1890	Ribonucleotide reductase-related protein; Similar to GP:3402271; identified by sequence similarity; putative.	Identified by match to protein family HMM.	0.570
CC_1890	CC_0587	CC_1890	CC_0587	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.774
CC_1890	CC_0737	CC_1890	CC_0737	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.495
CC_1890	CC_1244	CC_1890	CC_1244	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.458
CC_1890	CC_1888	CC_1890	CC_1888	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.420
CC_1890	CC_1889	CC_1890	CC_1889	Identified by match to protein family HMM.	Ribonucleotide reductase-related protein; Similar to GP:3402271; identified by sequence similarity; putative.	0.570
CC_1890	CC_1891	CC_1890	CC_1891	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.540
CC_1890	CC_2938	CC_1890	CC_2938	Identified by match to protein family HMM.	TPR domain protein; Identified by match to protein family HMM.	0.425
CC_1890	CC_2944	CC_1890	CC_2944	Identified by match to protein family HMM.	Pilus assembly protein CpaD; Similar to GP:7208426; identified by sequence similarity; putative.	0.470
CC_1890	hfaB	CC_1890	CC_2629	Identified by match to protein family HMM.	hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.	0.519