STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1933Lactoylglutathione lyase, putative; Identified by match to protein family HMM. (139 aa)    
Predicted Functional Partners:
CC_2374
methylmalonyl-CoA mutase, alpha subunit; Identified by match to PFAM protein family HMM PF01642.
 
  
 0.981
CC_2373
methylmalonyl-CoA mutase, beta subunit; Identified by match to protein family HMM.
 
  
 0.978
CC_3081
methylmalonyl-CoA mutase, alpha subunit; Identified by match to PFAM protein family HMM PF01642.
 
  
 0.978
CC_1975
propionyl-CoA carboxylase, beta subunit; Identified by match to protein family HMM.
 
 
 0.969
CC_2168
acetyl/propionyl-CoA carboxylase, alpha subunit; Identified by match to PFAM protein family HMM PF00289.
  
 
 0.911
CC_2179
propionyl-CoA carboxylase, alpha subunit; Identified by match to PFAM protein family HMM PF00289.
  
 
 0.909
CC_3085
Alcohol dehydrogenase; Identified by match to protein family HMM.
   
 0.907
CC_1932
Hypothetical protein; Identified by Glimmer2; putative.
       0.810
CC_2483
LAO transporter binding protein kinase, putative; May have GTPase activity. May also bind and hydrolyze ATP. May function as chaperone (By similarity).
 
  
 0.774
nuoI
NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
  
 0.687
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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