STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1973Conserved hypothetical protein; Identified by Glimmer2; putative. (450 aa)    
Predicted Functional Partners:
CC_1972
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
0.868
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.632
hutH
Histidine ammonia-lyase; Identified by match to protein family HMM; Belongs to the PAL/histidase family.
  
  
 0.628
CC_1971
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.572
parE
Topoisomerase IV, subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
  
    0.461
CC_2746
Dipeptidase; Identified by match to PFAM protein family HMM PF01244.
 
     0.435
CC_0743
Formiminoglutamase, putative; Similar to GP:2642341; identified by sequence similarity; putative.
  
  
 0.421
CC_0958
Formiminoglutamase; Similar to GP:2642341; identified by sequence similarity; putative.
  
  
 0.421
CC_0983
TonB-dependent receptor; Identified by match to protein family HMM.
  
    0.420
CC_0658
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.412
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.