Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CC_1284 | CC_1838 | CC_1284 | CC_1838 | Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM. | Ribosomal small subunit pseudouridine synthase A; Identified by match to protein family HMM; Belongs to the pseudouridine synthase RsuA family. | 0.935 |
| CC_1284 | CC_1980 | CC_1284 | CC_1980 | Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM. | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.914 |
| CC_1284 | rplC | CC_1284 | CC_1248 | Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.804 |
| CC_1284 | rplM | CC_1284 | CC_1376 | Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.822 |
| CC_1284 | rplO | CC_1284 | CC_1267 | Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.755 |
| CC_1284 | rplQ | CC_1284 | CC_1273 | Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM. | Ribosomal protein L17; Identified by match to TIGR protein family HMM TIGR00059. | 0.712 |
| CC_1284 | rplU | CC_1284 | CC_0319 | Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.807 |
| CC_1284 | rplX | CC_1284 | CC_1259 | Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM. | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.794 |
| CC_1284 | rsfS | CC_1284 | CC_3432 | Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM. | Iojap-related protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.738 |
| CC_1838 | CC_1284 | CC_1838 | CC_1284 | Ribosomal small subunit pseudouridine synthase A; Identified by match to protein family HMM; Belongs to the pseudouridine synthase RsuA family. | Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM. | 0.935 |
| CC_1838 | CC_1980 | CC_1838 | CC_1980 | Ribosomal small subunit pseudouridine synthase A; Identified by match to protein family HMM; Belongs to the pseudouridine synthase RsuA family. | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.918 |
| CC_1980 | CC_1284 | CC_1980 | CC_1284 | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal large subunit pseudouridine synthase D; Identified by match to protein family HMM. | 0.914 |
| CC_1980 | CC_1838 | CC_1980 | CC_1838 | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal small subunit pseudouridine synthase A; Identified by match to protein family HMM; Belongs to the pseudouridine synthase RsuA family. | 0.918 |
| CC_1980 | crcB | CC_1980 | CC_1981 | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | crcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. | 0.835 |
| CC_1980 | rplC | CC_1980 | CC_1248 | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.818 |
| CC_1980 | rplM | CC_1980 | CC_1376 | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.767 |
| CC_1980 | rplO | CC_1980 | CC_1267 | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.754 |
| CC_1980 | rplQ | CC_1980 | CC_1273 | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L17; Identified by match to TIGR protein family HMM TIGR00059. | 0.728 |
| CC_1980 | rplU | CC_1980 | CC_0319 | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.821 |
| CC_1980 | rplX | CC_1980 | CC_1259 | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.786 |
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