dipM protein (Caulobacter vibrioides CB15) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dipM

Peptidase, M23/M37 family; Identified by match to protein family HMM. (609 aa)

Predicted Functional Partners:

ftsZ

0.912

ftsA

0.865

pcm

0.826

CC_1876

0.825

surE

0.810

murG

0.770

CC_3434

0.767

PBP1a

0.758

mrdB

0.725

CC_2560

0.721

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_1876	CC_3434	CC_1876	CC_3434	N-acetylmuramoyl-L-alanine amidase; Identified by match to PFAM protein family HMM PF01520.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.914
CC_1876	dipM	CC_1876	CC_1996	N-acetylmuramoyl-L-alanine amidase; Identified by match to PFAM protein family HMM PF01520.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.825
CC_1876	ftsA	CC_1876	CC_2541	N-acetylmuramoyl-L-alanine amidase; Identified by match to PFAM protein family HMM PF01520.	Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.	0.467
CC_2560	PBP1a	CC_2560	CC_1516	Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.818
CC_2560	dipM	CC_2560	CC_1996	Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.721
CC_2560	ftsA	CC_2560	CC_2541	Identified by match to protein family HMM.	Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.	0.804
CC_2560	ftsZ	CC_2560	CC_2540	Identified by match to protein family HMM.	Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.	0.597
CC_2560	mrdB	CC_2560	CC_1547	Identified by match to protein family HMM.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.927
CC_2560	murG	CC_2560	CC_2551	Identified by match to protein family HMM.	N-acetylglucosaminyl transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.	0.846
CC_3434	CC_1876	CC_3434	CC_1876	Peptidase, M23/M37 family; Identified by match to protein family HMM.	N-acetylmuramoyl-L-alanine amidase; Identified by match to PFAM protein family HMM PF01520.	0.914
CC_3434	dipM	CC_3434	CC_1996	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.767
PBP1a	CC_2560	CC_1516	CC_2560	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.818
PBP1a	dipM	CC_1516	CC_1996	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.758
PBP1a	ftsZ	CC_1516	CC_2540	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.	0.589
PBP1a	mrdB	CC_1516	CC_1547	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.708
PBP1a	murG	CC_1516	CC_2551	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	N-acetylglucosaminyl transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.	0.648
dipM	CC_1876	CC_1996	CC_1876	Peptidase, M23/M37 family; Identified by match to protein family HMM.	N-acetylmuramoyl-L-alanine amidase; Identified by match to PFAM protein family HMM PF01520.	0.825
dipM	CC_2560	CC_1996	CC_2560	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.721
dipM	CC_3434	CC_1996	CC_3434	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.767
dipM	PBP1a	CC_1996	CC_1516	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.758