STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_2009Identified by match to protein family HMM; Belongs to the HesB/IscA family. (110 aa)    
Predicted Functional Partners:
CC_0462
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.891
CC_1865
Aminotransferase, class V; Identified by match to protein family HMM.
 
 
 0.847
CC_0385
Aminomethyltransferase, putative; Identified by match to protein family HMM; Belongs to the GcvT family.
 
 
 0.802
CC_2008
Deoxyguanosinetriphosphate triphosphohydrolase, putative; Identified by match to protein family HMM; Belongs to the dGTPase family. Type 2 subfamily.
     
 0.698
CC_0062
NifU-like domain protein; Identified by match to protein family HMM.
  
 
 0.680
CC_2505
Identified by match to protein family HMM; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.664
CC_2134
Identified by match to protein family HMM.
  
 
 0.642
fdxB
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM.
 
 0.626
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.602
CC_2394
Vanillate O-demethylase, reductase subunit; Identified by match to protein family HMM.
  
 0.598
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.