STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2015Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM. (305 aa)    
Predicted Functional Partners:
CC_3611
Identified by match to PFAM protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.919
cenR
DNA-binding response regulator; Identified by match to protein family HMM.
      
 0.770
lpxI
Conserved hypothetical protein; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to form 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the beta-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Can functionally complement lpxH deficiency in E.coli. Cannot use CDP- diacylglycerol as substrate; Belongs to the LpxI family.
     0.767
per
Perosamine synthetase; Catalyzes the synthesis of GDP-perosamine from GDP-4-keto-6- deoxy-D-mannose and L-glutamate. Can use only L-glutamate as amino donor. In vitro, can also use GDP-4-keto-3,6-dideoxymannose to produce GDP-3-deoxyperosamine. Involved in the formation of S-LPS, which is required for attachment of the protein S-layer to the outer membrane surface.
  
 0.716
CC_1909
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
     0.611
CC_1296
Myo-inositol 2-dehydrogenase; Identified by match to protein family HMM.
  
     0.605
CC_2016
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM.
  
    0.564
CC_0234
Flagellin modification protein FlmB; Identified by match to PFAM protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.522
CC_0128
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.517
CC_2161
D-alanyl-D-alanine carboxypeptidase; Identified by match to PFAM protein family HMM PF00768; Belongs to the peptidase S11 family.
      
 0.517
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.