STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2039Conserved hypothetical protein; Identified by Glimmer2; putative. (330 aa)    
Predicted Functional Partners:
CC_2038
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.605
CC_2041
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.556
CC_2040
ATP-dependent RNA helicase, DEAD/DEAH family; Identified by match to protein family HMM.
  
    0.539
CC_3420
ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.
  
  
  0.491
CC_0305
ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.
  
  
  0.470
CC_3274
ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.
  
  
  0.459
CC_2037
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.447
CC_1698
ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
  
     0.424
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.