STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2072Identified by match to PFAM protein family HMM PF00850. (296 aa)    
Predicted Functional Partners:
CC_2071
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.794
CC_1031
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.687
CC_1091
Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.
   
 0.638
CC_2793
Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.
   
 0.638
CC_3248
Glyceraldehyde 3-phosphate dehydrogenase; Identified by match to protein family HMM; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
 
  
 0.627
CC_3215
D-3-phosphoglycerate dehydrogenase; Identified by match to PFAM protein family HMM PF00389; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.623
CC_1485
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
 0.616
CC_0323
Conserved hypothetical protein; Identified by Glimmer2; putative.
    
 0.609
CC_1413
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.609
CC_2073
Acetyltransferase, GNAT family; Identified by match to protein family HMM.
  
  
 0.573
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.