CC_2088 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_2088

Identified by match to protein family HMM. (207 aa)

Predicted Functional Partners:

CC_2089

0.623

rpoA

0.578

CC_2090

0.564

CC_0128

0.472

CC_2302

0.450

rpoB

0.449

CC_2091

0.436

rpmD

0.429

CC_0299

0.423

CC_2092

0.423

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0128	CC_2088	CC_0128	CC_2088	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.472
CC_0128	rpmD	CC_0128	CC_1266	Hypothetical protein; Identified by Glimmer2; putative.	Ribosomal protein L30; Identified by match to protein family HMM.	0.683
CC_0128	rpoA	CC_0128	CC_1272	Hypothetical protein; Identified by Glimmer2; putative.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.517
CC_0128	rpoB	CC_0128	CC_0502	Hypothetical protein; Identified by Glimmer2; putative.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.635
CC_0299	CC_2088	CC_0299	CC_2088	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.423
CC_2088	CC_0128	CC_2088	CC_0128	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.472
CC_2088	CC_0299	CC_2088	CC_0299	Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.423
CC_2088	CC_2089	CC_2088	CC_2089	Identified by match to protein family HMM.	Sodium dependent nucleoside transporter, putative; Identified by match to protein family HMM.	0.623
CC_2088	CC_2090	CC_2088	CC_2090	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.564
CC_2088	CC_2091	CC_2088	CC_2091	Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.436
CC_2088	CC_2092	CC_2088	CC_2092	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.423
CC_2088	CC_2302	CC_2088	CC_2302	Identified by match to protein family HMM.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.450
CC_2088	rpmD	CC_2088	CC_1266	Identified by match to protein family HMM.	Ribosomal protein L30; Identified by match to protein family HMM.	0.429
CC_2088	rpoA	CC_2088	CC_1272	Identified by match to protein family HMM.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.578
CC_2088	rpoB	CC_2088	CC_0502	Identified by match to protein family HMM.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.449
CC_2089	CC_2088	CC_2089	CC_2088	Sodium dependent nucleoside transporter, putative; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.623
CC_2089	CC_2090	CC_2089	CC_2090	Sodium dependent nucleoside transporter, putative; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.608
CC_2089	CC_2091	CC_2089	CC_2091	Sodium dependent nucleoside transporter, putative; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.544
CC_2089	CC_2092	CC_2089	CC_2092	Sodium dependent nucleoside transporter, putative; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.503
CC_2090	CC_2088	CC_2090	CC_2088	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.564