STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2096Hydrolase, haloacid dehalogenase-like family; Identified by match to PFAM protein family HMM PF00702. (221 aa)    
Predicted Functional Partners:
CC_2097
Phosphoserine phosphatase; Identified by match to TIGR protein family HMM TIGR00338.
  
  
 0.793
CC_0920
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.692
CC_2099
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the CinA family.
       0.589
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
    0.586
CC_2095
GTP-binding protein, Mrp/Nbp345 family; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.557
CC_1481
Membrane protein, putative; Identified by match to protein family HMM.
  
  
 0.487
CC_1628
Membrane protein, putative; Identified by match to protein family HMM.
  
  
 0.487
CC_0449
PTS system, N-acetylglucosamine-specific IIABC component; Identified by match to protein family HMM.
  
  
 0.478
CC_0538
PTS system, N-acetylglucosamine-specific IIABC component; Identified by match to protein family HMM.
  
  
 0.478
CC_2285
Identified by match to protein family HMM.
 
  
 0.470
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.