STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2114Conserved hypothetical protein; Identified by Glimmer2; putative. (247 aa)    
Predicted Functional Partners:
rsmI
Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
  
 0.795
CC_2113
Identified by match to PFAM protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
       0.604
CC_2112
Hypothetical protein; Identified by Glimmer2; putative.
       0.547
rnr
Exoribonuclease, VacB and RNase II family; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
 
     0.517
CC_3518
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.456
CC_0707
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.454
CC_1343
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.454
CC_2111
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.405
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.