Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_2115Hypothetical protein; Identified by Glimmer2; putative. (55 aa)    
Predicted Functional Partners:
CC_2116
Hypothetical protein; Identified by Glimmer2; putative.
       0.554
CC_0277
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.472
CC_0556
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.472
CC_2494
Identified by match to protein family HMM; Belongs to the cytochrome P450 family.
      
 0.472
CC_0762
Cytochrome d ubiquinol oxidase subunit I; Identified by match to PFAM protein family HMM PF01654.
      
 0.471
CC_1409
Outer membrane protein OmpW; Similar to SP:P21364 GB:X13583 PID:43211 PID:902379 PID:902388; identified by sequence similarity; putative.
      
 0.471
FtrA
Transcriptional regulator, AraC family; Identified by match to protein family HMM.
      
 0.471
CC_3529
Succinate dehydrogenase, cytochrome b556 subunit; Identified by match to PFAM protein family HMM PF01127.
      
 0.470
FtrB
Transcriptional activator, putative; Identified by match to protein family HMM.
      
 0.428
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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