STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_2129FMN oxidoreductase; Identified by match to PFAM protein family HMM PF00724. (363 aa)    
Predicted Functional Partners:
CC_0727
Electron transfer flavoprotein, beta subunit; Identified by match to PFAM protein family HMM PF01012.
  
 
 0.589
CC_2130
Hypothetical protein; Identified by Glimmer2; putative.
       0.526
CC_0726
Electron transfer flavoprotein, alpha subunit; Identified by match to PFAM protein family HMM PF00766.
   
 
 0.435
CC_0653
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
    0.434
RpsA
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
  
 0.431
CC_3176
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to PFAM protein family HMM PF01558.
     
 0.416
tufA
Translation elongation factor EF-Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.410
CC_3199
Translation elongation factor EF-Tu; Identified by match to TIGR protein family HMM TIGR00485.
   
    0.410
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.