Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_2131Identified by match to PFAM protein family HMM PF00441. (403 aa)    
Predicted Functional Partners:
CC_2479
Identified by match to PFAM protein family HMM PF00441.
 
   
0.924
CC_1807
Identified by match to PFAM protein family HMM PF00441.
 
    
0.906
CC_1813
Identified by match to PFAM protein family HMM PF00378.
 
 0.902
CC_1311
Identified by match to PFAM protein family HMM PF00441.
 
   
0.901
CC_3189
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
 
 0.868
CC_2050
Identified by match to PFAM protein family HMM PF00441.
 
   
0.815
CC_3462
Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.810
CC_2132
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.781
CC_0076
Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.
  
 0.764
CC_1851
Identified by match to PFAM protein family HMM PF00378.
   
 0.755
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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