Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_2134Identified by match to protein family HMM. (258 aa)    
Predicted Functional Partners:
CC_0462
Hypothetical protein; Identified by Glimmer2; putative.
  
 0.986
dnaK
dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.875
CC_1476
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 0.837
CC_1865
Aminotransferase, class V; Identified by match to protein family HMM.
  
 0.819
CC_0075
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.663
CC_1858
Identified by match to protein family HMM; Belongs to the HesB/IscA family.
  
 
 0.642
CC_2009
Identified by match to protein family HMM; Belongs to the HesB/IscA family.
  
 
 0.642
CC_2135
Hypothetical protein; Identified by Glimmer2; putative.
       0.565
CC_2349
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.492
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
 
 0.481
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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