CC_2136 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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Score

CC_2136

Beta-glucosidase; Identified by match to protein family HMM. (469 aa)

Predicted Functional Partners:

CC_2285

0.958

CC_0978

0.913

CC_2227

0.913

CC_0796

0.903

CC_0797

0.676

CC_0968

0.676

CC_1105

0.676

CC_1756

0.676

CC_2052

0.676

CC_3054

0.676

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0796	CC_0797	Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	0.964
CC_0796	CC_0968	Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.	beta-D-glucosidase; Identified by match to protein family HMM.	0.935
CC_0796	CC_1105	Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.	Periplasmic beta-glucosidase; Identified by match to protein family HMM; Belongs to the glycosyl hydrolase 3 family.	0.944
CC_0796	CC_1756	Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.	beta-D-glucosidase; Identified by match to protein family HMM.	0.933
CC_0796	CC_2052	Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	0.934
CC_0796	CC_2136	Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.	Beta-glucosidase; Identified by match to protein family HMM.	0.903
CC_0796	CC_2285	Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.	Identified by match to protein family HMM.	0.913
CC_0796	CC_3054	Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.	Xylosidase/arabinosidase; Identified by match to protein family HMM.	0.936
CC_0797	CC_0796	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.	0.964
CC_0797	CC_0968	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	beta-D-glucosidase; Identified by match to protein family HMM.	0.754
CC_0797	CC_0978	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	alpha-L-rhamnosidase, putative; Similar to GP:5763989; identified by sequence similarity; putative.	0.905
CC_0797	CC_1105	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	Periplasmic beta-glucosidase; Identified by match to protein family HMM; Belongs to the glycosyl hydrolase 3 family.	0.747
CC_0797	CC_1756	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	beta-D-glucosidase; Identified by match to protein family HMM.	0.753
CC_0797	CC_2052	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	0.658
CC_0797	CC_2136	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	Beta-glucosidase; Identified by match to protein family HMM.	0.676
CC_0797	CC_2227	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00759.	0.937
CC_0797	CC_2285	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.903
CC_0797	CC_3054	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	Xylosidase/arabinosidase; Identified by match to protein family HMM.	0.751
CC_0968	CC_0796	beta-D-glucosidase; Identified by match to protein family HMM.	Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.	0.935
CC_0968	CC_0797	beta-D-glucosidase; Identified by match to protein family HMM.	1,4-beta-D-glucan glucohydrolase D; Identified by match to protein family HMM.	0.754