STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2152Secreted protein, putative; Identified by match to protein family HMM. (407 aa)    
Predicted Functional Partners:
CC_2153
Polysaccharide deacetylase; Identified by match to PFAM protein family HMM PF01522.
 
  
 0.976
CC_2151
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.872
CC_0947
Identified by match to PFAM protein family HMM PF00378.
      
 0.775
CC_0990
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.775
CC_2803
Glycosyl hydrolase, family 10; Identified by match to protein family HMM.
 
 
 0.758
CC_0543
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
   0.754
CC_0517
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.721
CC_3042
Endo-1,4-beta-xylanase; Identified by match to protein family HMM.
 
 
 
 0.694
CC_2154
Dipeptidyl peptidase IV; Identified by match to PFAM protein family HMM PF00930.
 
   
 0.643
CC_2811
Alpha-glucuronidase; Similar to PID:1771832 GB:AE000512; identified by sequence similarity; putative; Belongs to the glycosyl hydrolase 67 family.
 
     0.625
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.