Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_2153Polysaccharide deacetylase; Identified by match to PFAM protein family HMM PF01522. (301 aa)    
Predicted Functional Partners:
CC_2152
Secreted protein, putative; Identified by match to protein family HMM.
 
  
 0.976
CC_2154
Dipeptidyl peptidase IV; Identified by match to PFAM protein family HMM PF00930.
       0.576
mmpA
Membrane-associated zinc metalloprotease, putative; Involved in the regulated intramembrane proteolysis (RIP) of the short isoform of PodJ protein (PodJS), during the swarmer-to- stalked transition. The cleavage occurs near or within the single transmembrane of PodJS thereby releasing the N-terminal segment into the cytoplasm for subsequent degradation. It contributes to preserve asymmetry in the next cell cycle through sequential degradation.
     
 0.490
CC_0209
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.480
CC_1982
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.472
hfsF
HfsF; Identified by match to protein family HMM.
     
 0.470
CC_2151
Hypothetical protein; Identified by Glimmer2; putative.
       0.458
CC_2075
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.431
dipM
Peptidase, M23/M37 family; Identified by match to protein family HMM.
     
 0.412
hfsB
HfsB; Identified by Glimmer2; putative.
     
 0.405
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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