STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2154Dipeptidyl peptidase IV; Identified by match to PFAM protein family HMM PF00930. (738 aa)    
Predicted Functional Partners:
CC_2710
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.665
CC_2840
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.662
CC_2152
Secreted protein, putative; Identified by match to protein family HMM.
 
   
 0.640
CC_3107
Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.
  
    0.604
CC_2153
Polysaccharide deacetylase; Identified by match to PFAM protein family HMM PF01522.
       0.580
CC_0311
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.576
CC_3013
TonB-dependent receptor; Identified by match to protein family HMM.
  
    0.572
CC_2579
Identified by match to protein family HMM.
  
    0.550
CC_0925
OmpA-related protein; Similar to SP:P38370 GB:S64103 PID:402804; identified by sequence similarity; putative.
  
    0.548
CC_3723
Identified by match to PFAM protein family HMM PF00326.
  
    0.524
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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