CC_2182 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_2182

Identified by match to protein family HMM. (191 aa)

Predicted Functional Partners:

msrB

0.603

sodC

0.544

CC_2184

0.538

CC_1639

0.498

SdhB

0.486

CC_1548

0.465

CC_2058

0.455

CC_2185

0.447

CC_2072

0.419

CC_3648

0.419

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_1548	CC_2182	CC_1548	CC_2182	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.465
CC_1639	CC_2058	CC_1639	CC_2058	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.975
CC_1639	CC_2072	CC_1639	CC_2072	Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00850.	0.566
CC_1639	CC_2182	CC_1639	CC_2182	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.498
CC_1639	CC_3648	CC_1639	CC_3648	Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00850.	0.558
CC_1639	sodC	CC_1639	CC_1579	Identified by match to protein family HMM.	Superoxide dismutase, Cu-Zn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity). May function against extracytoplasmic toxic oxygen species; Belongs to the Cu-Zn superoxide dismutase family.	0.437
CC_2058	CC_1639	CC_2058	CC_1639	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.975
CC_2058	CC_2072	CC_2058	CC_2072	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF00850.	0.520
CC_2058	CC_2182	CC_2058	CC_2182	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.455
CC_2058	CC_3648	CC_2058	CC_3648	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to PFAM protein family HMM PF00850.	0.520
CC_2072	CC_1639	CC_2072	CC_1639	Identified by match to PFAM protein family HMM PF00850.	Identified by match to protein family HMM.	0.566
CC_2072	CC_2058	CC_2072	CC_2058	Identified by match to PFAM protein family HMM PF00850.	Hypothetical protein; Identified by Glimmer2; putative.	0.520
CC_2072	CC_2182	CC_2072	CC_2182	Identified by match to PFAM protein family HMM PF00850.	Identified by match to protein family HMM.	0.419
CC_2182	CC_1548	CC_2182	CC_1548	Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.465
CC_2182	CC_1639	CC_2182	CC_1639	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.498
CC_2182	CC_2058	CC_2182	CC_2058	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.455
CC_2182	CC_2072	CC_2182	CC_2072	Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00850.	0.419
CC_2182	CC_2184	CC_2182	CC_2184	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.538
CC_2182	CC_2185	CC_2182	CC_2185	Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.447
CC_2182	CC_3648	CC_2182	CC_3648	Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00850.	0.419