Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_2196Hypothetical protein; Identified by Glimmer2; putative. (209 aa)    
Predicted Functional Partners:
CC_0374
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.931
CC_0375
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.923
CC_0217
Thio:disulfide interchange protein, putative; Identified by match to protein family HMM.
   
  
 0.838
coq7
Coq7 family protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
       0.823
CC_2210
Thiol:disulfide interchange protein, putative; Identified by match to protein family HMM.
     
 0.818
CC_2195
DedA family protein; Identified by match to PFAM protein family HMM PF00597.
       0.817
CC_0030
Identified by match to protein family HMM; Belongs to the RNase T2 family.
      
 0.787
CC_1879
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.701
CC_3470
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.675
CC_1845
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.634
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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