STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2198Identified by match to PFAM protein family HMM PF01433. (588 aa)    
Predicted Functional Partners:
CC_0311
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.716
CC_2502
Identified by match to protein family HMM.
  
 
 0.575
CC_2196
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.528
CC_2199
Hypothetical protein; Identified by Glimmer2; putative.
       0.520
CC_2195
DedA family protein; Identified by match to PFAM protein family HMM PF00597.
       0.517
coq7
Coq7 family protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
       0.517
CC_0815
TonB-dependent receptor, putative; Similar to GP:2281664; identified by sequence similarity; putative.
  
    0.489
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
   
 
 0.472
CC_1142
TonB-dependent receptor, putative; Similar to GP:9949393; identified by sequence similarity; putative.
  
     0.471
CC_2362
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.423
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.