STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2226EF hand domain protein; Identified by match to protein family HMM. (111 aa)    
Predicted Functional Partners:
pssZ
PssZ; Identified by Glimmer2; putative.
    
 0.903
CC_1639
Identified by match to protein family HMM.
    
 0.854
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.814
CC_1504
MIP family protein; Identified by match to PFAM protein family HMM PF00230; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.739
CC_2799
Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to PFAM protein family HMM PF00254.
   
 0.726
CC_3636
Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to PFAM protein family HMM PF00254.
   
 0.726
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
 
 0.714
CC_2058
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.647
CC_1031
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.524
CC_2225
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.511
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.