CC_2248 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

CC_2248

Peptidase, M23/M37 family; Identified by match to protein family HMM. (266 aa)

Predicted Functional Partners:

CC_3434

0.824

CC_2297

0.758

CC_2247

0.670

CC_2249

0.560

CC_1875

0.525

dipM

0.520

CC_1872

0.509

CC_3034

0.508

CC_3277

0.494

CC_3301

0.493

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_1872	CC_1875	CC_1872	CC_1875	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.720
CC_1872	CC_2248	CC_1872	CC_2248	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.509
CC_1872	CC_2297	CC_1872	CC_2297	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.733
CC_1872	CC_3034	CC_1872	CC_3034	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.509
CC_1872	CC_3277	CC_1872	CC_3277	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.685
CC_1872	CC_3301	CC_1872	CC_3301	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.470
CC_1872	CC_3434	CC_1872	CC_3434	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.463
CC_1872	dipM	CC_1872	CC_1996	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.514
CC_1875	CC_1872	CC_1875	CC_1872	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.720
CC_1875	CC_2248	CC_1875	CC_2248	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.525
CC_1875	CC_3034	CC_1875	CC_3034	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.645
CC_1875	CC_3277	CC_1875	CC_3277	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.941
CC_1875	CC_3301	CC_1875	CC_3301	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.704
CC_1875	dipM	CC_1875	CC_1996	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.624
CC_2247	CC_2248	CC_2247	CC_2248	Hypothetical protein; Identified by Glimmer2; putative.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.670
CC_2247	CC_2249	CC_2247	CC_2249	Hypothetical protein; Identified by Glimmer2; putative.	Chemotaxis protein cheYIII; Identified by match to protein family HMM.	0.502
CC_2248	CC_1872	CC_2248	CC_1872	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Peptidase, M23/M37 family; Identified by match to protein family HMM.	0.509
CC_2248	CC_1875	CC_2248	CC_1875	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM.	0.525
CC_2248	CC_2247	CC_2248	CC_2247	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.670
CC_2248	CC_2249	CC_2248	CC_2249	Peptidase, M23/M37 family; Identified by match to protein family HMM.	Chemotaxis protein cheYIII; Identified by match to protein family HMM.	0.560