STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2260Identified by match to protein family HMM. (419 aa)    
Predicted Functional Partners:
CC_0345
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.642
CC_1485
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.615
CC_2259
Identified by match to protein family HMM.
 
   
0.588
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
       0.559
CC_1842
Response regulator, putative; Identified by match to protein family HMM.
  
     0.550
CC_2058
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.504
CC_2160
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.498
CC_3750
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.494
CC_3231
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.479
flbA
Flagellin modification protein FlmG; Identified by match to protein family HMM.
 
  
 0.453
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.