STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2270Isoquinoline 1-oxidoreductase, alpha subunit; Identified by match to protein family HMM. (154 aa)    
Predicted Functional Partners:
CC_2269
Isoquinoline 1-oxidoreductase, beta subunit; Identified by match to protein family HMM.
 0.999
CC_0021
Isoquinoline 1-oxidoreductase, beta subunit; Identified by match to protein family HMM.
 
 0.984
CC_2618
Xanthine dehydrogenase, C-terminal subunit; Identified by match to PFAM protein family HMM PF01315.
 
    0.954
CC_3577
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.821
CC_0019
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.814
CC_2617
Chaperone XdhC, putative; Identified by match to protein family HMM.
 
  
 0.775
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
       0.615
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.