STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2275NADH:riboflavin 5'-phosphate oxidoreductase; Identified by match to protein family HMM. (174 aa)    
Predicted Functional Partners:
CC_2278
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.654
CC_2276
Hypothetical protein; Identified by Glimmer2; putative.
       0.648
CC_2277
Identified by match to protein family HMM.
       0.648
CC_2394
Vanillate O-demethylase, reductase subunit; Identified by match to protein family HMM.
 
  
 0.601
CC_2274
Methylmalonate-semialdehyde dehydrogenase, putative; Identified by match to protein family HMM.
  
  
 0.587
CC_1169
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.550
CC_2279
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.545
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
 
  
 0.510
rutA
Conserved hypothetical protein; Catalyzes the pyrimidine ring opening between N-3 and C-4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product which can be spontaneously reduced to ureidoacrylate (By similarity).
 
  
 0.492
CC_3562
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the CoA-transferase III family.
 
    0.423
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.