STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2275NADH:riboflavin 5'-phosphate oxidoreductase; Identified by match to protein family HMM. (174 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
  
  
 0.675
CC_2278
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.651
CC_2276
Hypothetical protein; Identified by Glimmer2; putative.
       0.648
CC_2277
Identified by match to protein family HMM.
       0.648
CC_2394
Vanillate O-demethylase, reductase subunit; Identified by match to protein family HMM.
 
  
 0.632
CC_2274
Methylmalonate-semialdehyde dehydrogenase, putative; Identified by match to protein family HMM.
  
  
 0.581
CC_2279
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.545
CC_3176
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to PFAM protein family HMM PF01558.
     
 0.521
CC_1169
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.478
CC_2411
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase; Identified by match to protein family HMM.
  
  
 0.420
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.