STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2283Transporter, putative; Identified by match to protein family HMM. (541 aa)    
Predicted Functional Partners:
CC_2284
Transcriptional regulator, LacI family; Identified by match to protein family HMM.
 
  
 0.939
CC_2287
TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.
 
  
 0.934
CC_2282
Glucoamylase; Similar to SP:P29761 PID:216417; identified by sequence similarity; putative.
  
  
 0.928
CC_2286
Identified by match to protein family HMM.
 
  
 0.875
CC_2285
Identified by match to protein family HMM.
 
  
 0.847
CC_2327
TonB protein, putative; Similar to SP:O34261; identified by sequence similarity; putative.
      
 0.759
CC_0796
Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.
 
    0.700
CC_1754
TonB-dependent receptor; Identified by match to protein family HMM.
 
     0.646
CC_0814
Major facilitator family transporter; Identified by match to protein family HMM; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
   
 0.545
CC_1755
Tryptophan halogenase, putative; Identified by match to protein family HMM.
 
    0.455
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.