Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_2297Peptidase, M23/M37 family; Identified by match to protein family HMM. (298 aa)    
Predicted Functional Partners:
CC_3434
Peptidase, M23/M37 family; Identified by match to protein family HMM.
     
 0.799
CC_2248
Peptidase, M23/M37 family; Identified by match to protein family HMM.
      
 0.788
CC_3034
Peptidase, M23/M37 family; Identified by match to protein family HMM.
      
 0.788
CC_3301
Peptidase, M23/M37 family; Identified by match to protein family HMM.
      
 0.788
CC_1872
Peptidase, M23/M37 family; Identified by match to protein family HMM.
      
 0.787
CC_2296
Hypothetical protein; Identified by Glimmer2; putative.
       0.781
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
       0.518
dipM
Peptidase, M23/M37 family; Identified by match to protein family HMM.
     
 0.513
CC_2331
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
     
 0.463
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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