STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2311Glutathione S-transferase, putative; Identified by match to protein family HMM. (230 aa)    
Predicted Functional Partners:
CC_2312
Regulatory protein, putative; Similar to GB:AE000513; identified by sequence similarity; putative.
 
    0.762
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.578
CC_3603
Ribonuclease D, putative; Identified by match to protein family HMM.
      
 0.477
CC_0128
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.472
CC_2310
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.466
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.449
CC_2974
Hypothetical protein; Identified by Glimmer2; putative.
  
   0.431
CC_2302
Glutathione reductase; Maintains high levels of reduced glutathione.
   
 
 0.417
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.410
CC_3539
Thioredoxin; Identified by match to protein family HMM; Belongs to the thioredoxin family.
    
 
 0.400
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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