STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2316Transcriptional regulator, LacI family; Identified by match to protein family HMM. (350 aa)    
Predicted Functional Partners:
CC_0537
PTS system, fructose-specific EIIA/HPr/EI components; Identified by match to protein family HMM.
  
 
 0.822
CC_0448
PTS system, fructose-specific EIIA/HPr/EI components; Identified by match to protein family HMM.
  
 
 0.819
CC_2615
Inosine-uridine preferring nucleoside hydrolase; Identified by match to PFAM protein family HMM PF01156.
  
  
 0.770
CC_1928
Inosine-uridine preferring nucleoside hydrolase; Identified by match to PFAM protein family HMM PF01156.
     
 0.768
CC_3607
Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645.
    
 
 0.727
CC_2315
Membrane protein, putative; Identified by match to protein family HMM.
  
  
 0.531
CC_0859
Sugar ABC transporter, periplasmic sugar-binding protein; Identified by match to protein family HMM.
 
  
 0.526
CC_0861
Sugar ABC transporter, permease protein; Similar to GB:L10328 SP:P04984 GB:M13169 PID:147514 PID:290600; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.475
CC_2314
spoU rRNA methylase family protein; Identified by match to protein family HMM.
       0.467
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.