STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2322Conserved hypothetical protein; Identified by Glimmer2; putative. (254 aa)    
Predicted Functional Partners:
CC_0923
Identified by match to protein family HMM.
 
     0.958
CC_2323
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.575
CC_0124
3-hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.508
CC_0244
Hydrolase, haloacid dehalogenase-like family; Identified by match to PFAM protein family HMM PF00702.
 
   0.489
CC_1967
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.468
CC_1841
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the CoA-transferase III family.
  
    0.455
CC_0944
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.442
CC_2324
Sensor histidine kinase/response regulator; Identified by match to protein family HMM.
   
   0.439
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.