STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2331DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (92 aa)    
Predicted Functional Partners:
dipM
Peptidase, M23/M37 family; Identified by match to protein family HMM.
  
  
 0.642
ihfA
Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
  
 
0.634
CC_3434
Peptidase, M23/M37 family; Identified by match to protein family HMM.
  
  
 0.533
CC_2333
Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.
       0.509
CC_2332
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.500
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
  
 0.493
CC_2248
Peptidase, M23/M37 family; Identified by match to protein family HMM.
     
 0.474
CC_2297
Peptidase, M23/M37 family; Identified by match to protein family HMM.
     
 0.474
CC_3034
Peptidase, M23/M37 family; Identified by match to protein family HMM.
     
 0.474
CC_3301
Peptidase, M23/M37 family; Identified by match to protein family HMM.
     
 0.474
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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