STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2333Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758. (479 aa)    
Predicted Functional Partners:
CC_2332
Conserved hypothetical protein; Identified by Glimmer2; putative.
    0.958
CC_1333
Phage SPO1 DNA polymerase-related protein; Identified by match to TIGR protein family HMM TIGR00758.
  
  
 
0.926
CC_1549
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.907
dnaE2
DNA polymerase III, alpha subunit, putative; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). Along with ImuA and ImuB is required for the error-prone processing of DNA lesions (By similarity).
 
    0.636
CC_2331
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.509
CC_0522
Identified by match to protein family HMM.
 
    0.504
CC_2554
Sensor histidine kinase, putative; Identified by match to protein family HMM.
  
     0.496
CC_2909
Sensor histidine kinase, putative; Identified by match to protein family HMM.
  
    0.478
CC_3560
Response regulator/sensor histidine kinase; Identified by match to protein family HMM.
  
     0.477
CC_3015
Response regulator; Identified by match to protein family HMM.
  
     0.473
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.