STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2349Hypothetical protein; Identified by Glimmer2; putative. (164 aa)    
Predicted Functional Partners:
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
    0.829
CC_2237
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.774
CC_0248
Sensor histidine kinase; Identified by match to protein family HMM.
  
     0.751
CC_3664
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.723
CC_0247
Response regulator; Identified by match to protein family HMM.
  
     0.712
CC_1451
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.702
CC_0903
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.695
hisS
histidyl-tRNA synthetase; Identified by match to TIGR protein family HMM TIGR00442.
  
    0.694
cenK
Sensor histidine kinase; Identified by match to protein family HMM.
  
    0.644
rcdA
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.614
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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