Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CC_0247 | CC_0248 | CC_0247 | CC_0248 | Response regulator; Identified by match to protein family HMM. | Sensor histidine kinase; Identified by match to protein family HMM. | 0.993 |
CC_0247 | CC_0903 | CC_0247 | CC_0903 | Response regulator; Identified by match to protein family HMM. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.419 |
CC_0247 | CC_2349 | CC_0247 | CC_2349 | Response regulator; Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.712 |
CC_0247 | CC_3664 | CC_0247 | CC_3664 | Response regulator; Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.403 |
CC_0247 | cenK | CC_0247 | CC_0530 | Response regulator; Identified by match to protein family HMM. | Sensor histidine kinase; Identified by match to protein family HMM. | 0.600 |
CC_0248 | CC_0247 | CC_0248 | CC_0247 | Sensor histidine kinase; Identified by match to protein family HMM. | Response regulator; Identified by match to protein family HMM. | 0.993 |
CC_0248 | CC_0903 | CC_0248 | CC_0903 | Sensor histidine kinase; Identified by match to protein family HMM. | Conserved hypothetical protein; Identified by Glimmer2; putative. | 0.624 |
CC_0248 | CC_2237 | CC_0248 | CC_2237 | Sensor histidine kinase; Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.475 |
CC_0248 | CC_2349 | CC_0248 | CC_2349 | Sensor histidine kinase; Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.751 |
CC_0248 | CC_3664 | CC_0248 | CC_3664 | Sensor histidine kinase; Identified by match to protein family HMM. | Hypothetical protein; Identified by Glimmer2; putative. | 0.594 |
CC_0248 | cenK | CC_0248 | CC_0530 | Sensor histidine kinase; Identified by match to protein family HMM. | Sensor histidine kinase; Identified by match to protein family HMM. | 0.600 |
CC_0903 | CC_0247 | CC_0903 | CC_0247 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Response regulator; Identified by match to protein family HMM. | 0.419 |
CC_0903 | CC_0248 | CC_0903 | CC_0248 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Sensor histidine kinase; Identified by match to protein family HMM. | 0.624 |
CC_0903 | CC_2237 | CC_0903 | CC_2237 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.607 |
CC_0903 | CC_2349 | CC_0903 | CC_2349 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.695 |
CC_0903 | CC_3664 | CC_0903 | CC_3664 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.701 |
CC_0903 | cenK | CC_0903 | CC_0530 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Sensor histidine kinase; Identified by match to protein family HMM. | 0.481 |
CC_0903 | hisS | CC_0903 | CC_3513 | Conserved hypothetical protein; Identified by Glimmer2; putative. | histidyl-tRNA synthetase; Identified by match to TIGR protein family HMM TIGR00442. | 0.411 |
CC_0903 | rcdA | CC_0903 | CC_3295 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.751 |
CC_1451 | CC_2237 | CC_1451 | CC_2237 | Conserved hypothetical protein; Identified by Glimmer2; putative. | Hypothetical protein; Identified by Glimmer2; putative. | 0.768 |
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