STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2372Conserved hypothetical protein; Identified by Glimmer2; putative. (335 aa)    
Predicted Functional Partners:
CC_0614
Nitrate transporter, NarK/NasA family; Identified by match to protein family HMM.
  
 
 0.914
CC_0615
Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
 
 0.901
CC_0616
Nitrite reductase [NAD(P)H], small subunit; Identified by match to protein family HMM.
     
  0.900
CC_0617
NasA/NapA/NarB nitrate reductase, large subunit family protein; Identified by match to PFAM protein family HMM PF00384; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
  0.900
CC_1310
Identified by match to PFAM protein family HMM PF00441.
 
  
 0.639
CC_2131
Identified by match to PFAM protein family HMM PF00441.
 
  
 0.603
CC_2371
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.544
CC_2374
methylmalonyl-CoA mutase, alpha subunit; Identified by match to PFAM protein family HMM PF01642.
  
    0.532
CC_2373
methylmalonyl-CoA mutase, beta subunit; Identified by match to protein family HMM.
       0.511
CC_2049
Identified by match to PFAM protein family HMM PF00441.
 
  
 0.509
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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