STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PssZExopolysaccharide production protein Pss; Similar to SP:P10498 GB:X12568 PID:581513; identified by sequence similarity; putative. (188 aa)    
Predicted Functional Partners:
CC_0164
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.906
CC_1011
Identified by match to protein family HMM.
 
  
 0.894
CC_3210
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 0.753
CC_2383
UDP-glucose 4-epimerase; Identified by match to protein family HMM; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
  
 0.676
hfsD
HfsD; Identified by Glimmer2; putative.
 
  
 0.658
CC_0095
Identified by match to protein family HMM; Belongs to the glycosyltransferase 26 family.
    
 0.622
CC_0169
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.593
CC_2382
UDP-glucose 6-dehydrogenase; Identified by match to PFAM protein family HMM PF00984.
     
 0.560
CC_2381
Hypothetical protein; Identified by Glimmer2; putative.
       0.516
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.510
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.