STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2391Transcriptional regulator, MarR family; Identified by match to protein family HMM. (158 aa)    
Predicted Functional Partners:
CC_2392
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
   
 0.617
CC_2393
Vanillate O-demethylase oxygenase, subunit A; Identified by match to protein family HMM.
 
    0.609
CC_2394
Vanillate O-demethylase, reductase subunit; Identified by match to protein family HMM.
 
   
 0.538
CC_3338
feruloyl-CoA synthetase; Identified by match to protein family HMM.
  
     0.535
CC_0391
feruloyl-CoA synthetase; Identified by match to protein family HMM.
  
     0.529
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.