STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2392Transcriptional regulator, GntR family; Identified by match to protein family HMM. (244 aa)    
Predicted Functional Partners:
CC_2393
Vanillate O-demethylase oxygenase, subunit A; Identified by match to protein family HMM.
 
   
 0.934
CC_2394
Vanillate O-demethylase, reductase subunit; Identified by match to protein family HMM.
 
   
 0.914
CC_0884
Transcriptional regulator, putative; Identified by match to protein family HMM.
  
     0.773
CC_2661
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
     0.773
CC_1776
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
     0.772
CC_0783
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.761
CC_1420
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.719
CC_2813
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.712
CC_2411
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase; Identified by match to protein family HMM.
  
  
 0.679
CC_0986
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.678
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.