STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2394Vanillate O-demethylase, reductase subunit; Identified by match to protein family HMM. (316 aa)    
Predicted Functional Partners:
CC_2393
Vanillate O-demethylase oxygenase, subunit A; Identified by match to protein family HMM.
 
 
 0.999
CC_0946
Identified by match to protein family HMM; Belongs to the cytochrome P450 family.
 0.980
CC_2494
Identified by match to protein family HMM; Belongs to the cytochrome P450 family.
 0.979
CC_0063
Identified by match to protein family HMM; Belongs to the cytochrome P450 family.
 0.976
CC_3606
Glutamate synthase, small subunit; Identified by match to protein family HMM.
   
 0.933
CC_2392
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
   
 0.914
CC_0462
Hypothetical protein; Identified by Glimmer2; putative.
  
 0.900
CC_1865
Aminotransferase, class V; Identified by match to protein family HMM.
  
 0.887
nuoI
NADH dehydrogenase I, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.877
CC_2411
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase; Identified by match to protein family HMM.
  
  
 0.868
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.