STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2399Transcriptional regulator, AraC family; Identified by match to protein family HMM. (312 aa)    
Predicted Functional Partners:
CC_2400
acid-CoA ligase, putative; Identified by match to protein family HMM.
  
    0.623
CC_2398
TonB-dependent receptor; Identified by match to protein family HMM.
 
     0.601
CC_2403
Transcriptional regulator, AraC family; Identified by match to protein family HMM.
 
     0.537
CC_2401
Identified by match to PFAM protein family HMM PF00378.
       0.516
CC_2394
Vanillate O-demethylase, reductase subunit; Identified by match to protein family HMM.
  
   
 0.449
CC_2402
Vanillin dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.
     
 0.420
CC_2397
Benzaldehyde dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.
     
 0.412
CC_2611
Identified by match to protein family HMM.
 
      0.408
CC_2396
Benzyl-alcohol dehydrogenase; Identified by match to protein family HMM.
       0.405
CC_2960
Transcriptional regulator, AraC family; Identified by match to protein family HMM.
 
 
 0.405
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.