STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_2409Protocatechuate 3,4-dioxygenase, alpha subunit; Identified by match to protein family HMM. (216 aa)    
Predicted Functional Partners:
CC_2408
Protocatechuate 3,4-dioxygenase, beta subunit; Identified by match to PFAM protein family HMM PF00775.
 
0.999
CC_2404
P-hydroxybenzoate hydroxylase; Identified by match to PFAM protein family HMM PF01360.
 
  
 0.996
CC_2410
3-carboxy-cis,cis-muconate cycloisomerase; Identified by match to protein family HMM.
 
 
 0.996
CC_2411
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase; Identified by match to protein family HMM.
 
  
 0.964
CC_2406
3-oxoadipate CoA-transferase, beta subunit; Identified by match to PFAM protein family HMM PF01144.
  
  
 0.820
CC_2405
3-oxoadipate CoA-transferase, alpha subunit; Identified by match to PFAM protein family HMM PF01144.
  
  
 0.816
CC_2403
Transcriptional regulator, AraC family; Identified by match to protein family HMM.
 
   
 0.786
CC_2407
Beta-ketoadipyl CoA thiolase; Identified by match to protein family HMM; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.772
CC_2412
Major facilitator family transporter; Identified by match to protein family HMM.
 
   
 0.635
CC_2402
Vanillin dehydrogenase; Identified by match to protein family HMM; Belongs to the aldehyde dehydrogenase family.
 
  
 0.481
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.