STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hfsEHfsE; Identified by Glimmer2; putative. (512 aa)    
Predicted Functional Partners:
hfsF
HfsF; Identified by match to protein family HMM.
 
  
 0.994
hfsD
HfsD; Identified by Glimmer2; putative.
 
  
 0.991
hfsG
Identified by match to protein family HMM.
 
  
 0.982
CC_0164
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.981
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.958
hfsH
HfsH; Identified by match to PFAM protein family HMM PF01522.
 
   
 0.954
hfsA
HfsA; Identified by Glimmer2; putative.
 
  
 0.951
CC_0169
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.936
hfsB
HfsB; Identified by Glimmer2; putative.
  
  
 0.915
hfsC
HfsC; Identified by Glimmer2; putative.
 
  
 0.912
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.