STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hfsFHfsF; Identified by match to protein family HMM. (480 aa)    
Predicted Functional Partners:
hfsE
HfsE; Identified by Glimmer2; putative.
 
  
 0.991
hfsH
HfsH; Identified by match to PFAM protein family HMM PF01522.
 
  
 0.984
hfsG
Identified by match to protein family HMM.
 
  
 0.978
hfsC
HfsC; Identified by Glimmer2; putative.
 
  
 0.960
hfsI
HfsI; Identified by Glimmer2; putative.
 
  
 0.949
hfsA
HfsA; Identified by Glimmer2; putative.
 
  
 0.946
hfaB
hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.
  
   
 0.898
hfsD
HfsD; Identified by Glimmer2; putative.
 
  
 0.870
CC_3629
dTDP-D-glucose-4,6-dehydratase; Identified by match to protein family HMM; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.830
CC_3633
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.829
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.